Other available software:

RLZ -

Relative Lempel-Ziv Compression of Genomes for Large-Scale Storage and Retrieval

is-rSNP -

SNP predictions made quick and easy

GWIS

Multivariate GWAS analysis

GWIS is a new tool for genome wide detection of two-interactions of SNPs which are related to disease. GWIS cuts the computational time for analyzing all pairs of SNP interactions from months to minutes on commodity computers, providing an unprecedented capability for investigation of complex diseases.

Currently, we have released a beta-version of the software which allows for demonstration of the platform using 3 different statistical filters. Future releases will include the integration of a GPU version and increased visualisation and post-processing options.

Contact

bioinformatics<at>nicta.com.au

README
GWIS 0.1 User Manual
Supplementary - Commodity Platform for Genome Wide Interaction Search:

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